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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0023589 |
| Transcript ID | Lj0g3v0023589.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zn/Cd P(IB)-type ATPase [Medicago truncatula] gi|357449309|ref|XP_003594931.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | – | – | |
| Pfam | 7 | 113 | 107 | 1.20E-19 | ||
| PANTHER | 9 | 147 | 139 | 2.40E-49 | – | |
| PANTHER | 9 | 147 | 139 | 2.40E-49 | – | |
| TIGRFAM | 13 | 143 | 131 | 5.00E-21 | ||
| SUPERFAMILY | 25 | 115 | 91 | 1.70E-05 | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| Phobius | 41 | 62 | 22 | – | – | |
| Phobius | 63 | 67 | 5 | – | – | |
| Phobius | 68 | 96 | 29 | – | – | |
| TMHMM | 72 | 94 | 23 | – | – | |
| Phobius | 97 | 151 | 55 | – | – | |
| Gene3D | 97 | 138 | 42 | 4.90E-09 | ||
| SUPERFAMILY | 110 | 134 | 25 | 7.69E-05 | ||
| ProSitePatterns | 124 | 130 | 7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0023589.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0023589.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.