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Lj0g3v0042639.1

Overview

Field Value
Gene ID Lj0g3v0042639
Transcript ID Lj0g3v0042639.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cadmium/zinc-transporting ATPase HMA2-like isoform X2 [Cicer arietinum] gi|502085535|ref|XP_004487940.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 36 36 – –
Pfam
PF00122
3 109 107 3.20E-19
IPR008250
PANTHER
PTHR24093
4 285 282 5.80E-106 –
PANTHER
PTHR24093:SF318
4 285 282 5.80E-106 –
TIGRFAM
TIGR01494
9 285 277 6.00E-28
IPR001757
SUPERFAMILY
SSF81665
20 112 93 3.14E-05 –
Phobius
TRANSMEMBRANE
37 58 22 – –
TMHMM
TMhelix
37 59 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
59 63 5 – –
Phobius
TRANSMEMBRANE
64 92 29 – –
TMHMM
TMhelix
69 91 23 – –
Gene3D
G3DSA:3.40.50.1000
93 133 41 6.20E-15
IPR023214
Phobius
CYTOPLASMIC_DOMAIN
93 296 204 – –
SUPERFAMILY
SSF56784
106 130 25 7.50E-16
IPR023214
Pfam
PF00702
114 286 173 3.90E-19 –
PRINTS
PR00119
118 132 15 5.80E-06 –
ProSitePatterns
PS00154
120 126 7 –
IPR018303
Gene3D
G3DSA:3.40.1110.10
134 214 81 1.10E-07
IPR023299
SUPERFAMILY
SSF56784
158 287 130 7.50E-16
IPR023214
Gene3D
G3DSA:3.40.50.1000
236 285 50 6.20E-15
IPR023214
PRINTS
PR00119
241 252 12 5.80E-06 –
PRINTS
PR00119
263 273 11 5.80E-06 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0042639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0042639.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.