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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0043729 |
| Transcript ID | Lj0g3v0043729.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cyclic nucleotide-gated channel 18 [Theobroma cacao] gi|508710451|gb|EOY02348.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | – | – | |
| PANTHER | 16 | 237 | 222 | 0 | – | |
| PANTHER | 16 | 237 | 222 | 0 | – | |
| SUPERFAMILY | 40 | 237 | 198 | 9.03E-27 | – | |
| Pfam | 48 | 372 | 325 | 3.20E-24 | ||
| Gene3D | 49 | 236 | 188 | 9.20E-15 | – | |
| Phobius | 52 | 70 | 19 | – | – | |
| TMHMM | 52 | 74 | 23 | – | – | |
| Phobius | 71 | 89 | 19 | – | – | |
| Phobius | 90 | 108 | 19 | – | – | |
| Phobius | 109 | 140 | 32 | – | – | |
| Phobius | 141 | 160 | 20 | – | – | |
| TMHMM | 141 | 160 | 20 | – | – | |
| Phobius | 161 | 171 | 11 | – | – | |
| Phobius | 172 | 190 | 19 | – | – | |
| TMHMM | 173 | 192 | 20 | – | – | |
| Phobius | 191 | 210 | 20 | – | – | |
| Phobius | 211 | 231 | 21 | – | – | |
| TMHMM | 212 | 234 | 23 | – | – | |
| Phobius | 232 | 338 | 107 | – | – | |
| PANTHER | 290 | 627 | 338 | 0 | – | |
| PANTHER | 290 | 627 | 338 | 0 | – | |
| Gene3D | 309 | 368 | 60 | 9.20E-15 | – | |
| SUPERFAMILY | 309 | 369 | 61 | 9.03E-27 | – | |
| TMHMM | 339 | 361 | 23 | – | – | |
| Phobius | 339 | 364 | 26 | – | – | |
| Phobius | 365 | 695 | 331 | – | – | |
| SUPERFAMILY | 377 | 572 | 196 | 2.36E-38 | ||
| Gene3D | 378 | 438 | 61 | 3.20E-12 | – | |
| Gene3D | 445 | 563 | 119 | 9.50E-27 | ||
| CDD | 447 | 578 | 132 | 4.57E-19 | – | |
| ProSiteProfiles | 447 | 577 | 131 | 11.902 | ||
| SMART | 447 | 578 | 132 | 1.00E-12 | ||
| Pfam | 470 | 557 | 88 | 1.70E-09 | ||
| PANTHER | 647 | 695 | 49 | 0 | – | |
| PANTHER | 647 | 695 | 49 | 0 | – | |
| MobiDBLite | 664 | 695 | 32 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0043729.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0043729.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.