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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0047089 |
| Transcript ID | Lj0g3v0047089.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 450 | 450 | 2.30E-243 | – | |
| PANTHER | 1 | 450 | 450 | 2.30E-243 | – | |
| ProSiteProfiles | 6 | 40 | 35 | 5.941 | ||
| Pfam | 40 | 85 | 46 | 5.30E-12 | ||
| ProSiteProfiles | 41 | 75 | 35 | 11.4 | ||
| TIGRFAM | 43 | 77 | 35 | 3.20E-07 | ||
| Pfam | 92 | 121 | 30 | 1.30E-09 | ||
| ProSiteProfiles | 94 | 128 | 35 | 11.531 | ||
| TIGRFAM | 96 | 130 | 35 | 5.10E-08 | ||
| Pfam | 128 | 177 | 50 | 8.00E-19 | ||
| ProSiteProfiles | 129 | 163 | 35 | 11.827 | ||
| TIGRFAM | 131 | 165 | 35 | 1.00E-07 | ||
| ProSiteProfiles | 164 | 198 | 35 | 11.948 | ||
| TIGRFAM | 166 | 200 | 35 | 7.40E-07 | ||
| Pfam | 198 | 247 | 50 | 4.10E-17 | ||
| ProSiteProfiles | 199 | 233 | 35 | 11.542 | ||
| TIGRFAM | 201 | 235 | 35 | 2.20E-07 | ||
| ProSiteProfiles | 234 | 268 | 35 | 12.595 | ||
| TIGRFAM | 237 | 270 | 34 | 4.30E-10 | ||
| Gene3D | 249 | 438 | 190 | 1.40E-05 | ||
| Pfam | 268 | 317 | 50 | 2.20E-21 | ||
| ProSiteProfiles | 269 | 303 | 35 | 14.557 | ||
| TIGRFAM | 271 | 305 | 35 | 4.00E-12 | ||
| ProSiteProfiles | 304 | 338 | 35 | 12.441 | ||
| TIGRFAM | 306 | 340 | 35 | 3.80E-08 | ||
| Pfam | 335 | 364 | 30 | 5.10E-12 | ||
| ProSiteProfiles | 339 | 373 | 35 | 11.663 | ||
| TIGRFAM | 341 | 374 | 34 | 8.30E-06 | ||
| Pfam | 374 | 420 | 47 | 6.50E-16 | ||
| ProSiteProfiles | 374 | 408 | 35 | 13.987 | ||
| TIGRFAM | 377 | 410 | 34 | 1.80E-11 | ||
| ProSiteProfiles | 409 | 443 | 35 | 10.38 | ||
| TIGRFAM | 411 | 441 | 31 | 1.60E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0047089.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0047089.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.