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Lj0g3v0049129.1

Overview

Field Value
Gene ID Lj0g3v0049129
Transcript ID Lj0g3v0049129.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RHN1-like [Glycine max] gi|356511351|ref|XP_003524390.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073:SF501
1 197 197 1.80E-126 –
PANTHER
PTHR24073
1 197 197 1.80E-126 –
Gene3D
G3DSA:3.40.50.300
5 197 193 2.20E-68
IPR027417
ProSiteProfiles
PS51419
6 198 193 33.014 –
SMART
SM00173
8 174 167 1.00E-32 –
SUPERFAMILY
SSF52540
8 183 176 4.05E-55
IPR027417
CDD
cd01860
10 171 162 9.57E-109 –
SMART
SM00175
11 174 164 1.90E-76 –
TIGRFAM
TIGR00231
11 167 157 1.00E-30
IPR005225
PRINTS
PR00449
11 32 22 7.30E-36 –
Pfam
PF00071
12 171 160 1.90E-60
IPR001806
SMART
SM00174
13 174 162 1.20E-11 –
SMART
SM00176
16 195 180 2.10E-08 –
PRINTS
PR00449
34 50 17 7.30E-36 –
PRINTS
PR00449
52 74 23 7.30E-36 –
PRINTS
PR00449
114 127 14 7.30E-36 –
PRINTS
PR00449
149 171 23 7.30E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0049129.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0049129.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.