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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0050429 |
| Transcript ID | Lj0g3v0050429.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calcium-transporting ATPase [Medicago truncatula] gi|357495317|ref|XP_003617947.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 580 | 580 | 1.00E-100 | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| PANTHER | 1 | 580 | 580 | 1.00E-100 | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| SUPERFAMILY | 1 | 60 | 60 | 3.27E-05 | – | |
| Gene3D | 2 | 149 | 148 | 1.60E-15 | ||
| Phobius | 2 | 13 | 12 | – | – | |
| Phobius | 14 | 18 | 5 | – | – | |
| Phobius | 19 | 27 | 9 | – | – | |
| TMHMM | 27 | 46 | 20 | – | – | |
| Phobius | 28 | 46 | 19 | – | – | |
| Pfam | 33 | 154 | 122 | 2.30E-09 | ||
| Phobius | 47 | 262 | 216 | – | – | |
| SUPERFAMILY | 66 | 145 | 80 | 2.22E-09 | – | |
| Gene3D | 177 | 215 | 39 | 4.60E-19 | ||
| Gene3D | 261 | 488 | 228 | 4.60E-19 | ||
| Phobius | 263 | 285 | 23 | – | – | |
| TMHMM | 263 | 285 | 23 | – | – | |
| SUPERFAMILY | 263 | 315 | 53 | 3.27E-05 | – | |
| Phobius | 286 | 304 | 19 | – | – | |
| Phobius | 305 | 329 | 25 | – | – | |
| Phobius | 330 | 580 | 251 | – | – | |
| SUPERFAMILY | 375 | 507 | 133 | 4.14E-11 | ||
| SUPERFAMILY | 499 | 562 | 64 | 5.39E-05 | ||
| Gene3D | 499 | 573 | 75 | 4.00E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
Expression pattern of Lj0g3v0050429.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0050429.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.