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Lj0g3v0050859.1

Overview

Field Value
Gene ID Lj0g3v0050859
Transcript ID Lj0g3v0050859.1
Lotus japonicus genome version MG20 v3.0
Description NADH dehydrogenase subunit I [Lotus japonicus] gi|13518491|ref|NP_084849.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
TIGRFAM
TIGR00403
1 151 151 1.90E-96
IPR004497
Phobius
SIGNAL_PEPTIDE_N_REGION
1 1 1 – –
Phobius
SIGNAL_PEPTIDE
1 18 18 – –
PANTHER
PTHR10849
1 151 151 7.90E-78 –
Phobius
SIGNAL_PEPTIDE_H_REGION
2 9 8 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
10 18 9 – –
Hamap
MF_01351
16 147 132 22.497
IPR010226
Phobius
NON_CYTOPLASMIC_DOMAIN
19 151 133 – –
TIGRFAM
TIGR01971
25 142 118 3.30E-42
IPR010226
Gene3D
G3DSA:3.30.70.20
26 123 98 5.20E-19 –
SUPERFAMILY
SSF54862
42 141 100 1.23E-24 –
ProSiteProfiles
PS51379
55 84 30 9.735
IPR017896
Pfam
PF13187
63 118 56 2.90E-08
IPR017896
ProSitePatterns
PS00198
64 75 12 –
IPR017900
ProSiteProfiles
PS51379
95 124 30 10.432
IPR017896
ProSitePatterns
PS00198
104 115 12 –
IPR017900

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008137
Molecular function NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016651
Molecular function Oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Subterm of
GO:0051539
Molecular function 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0050859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0050859.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.