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Lj0g3v0059909.1

Overview

Field Value
Gene ID Lj0g3v0059909
Transcript ID Lj0g3v0059909.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 107 107 – –
Gene3D
G3DSA:3.80.10.10
5 247 243 1.10E-16
IPR032675
SUPERFAMILY
SSF81383
5 43 39 4.97E-05
IPR001810
ProSiteProfiles
PS50181
6 53 48 9.418
IPR001810
PANTHER
PTHR24006
6 265 260 1.90E-54 –
PANTHER
PTHR24006:SF466
6 265 260 1.90E-54 –
SUPERFAMILY
SSF52047
47 260 214 2.39E-05 –
Phobius
TRANSMEMBRANE
108 128 21 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
129 691 563 – –
SUPERFAMILY
SSF52047
153 233 81 4.19E-14 –
TIGRFAM
TIGR02167
154 169 16 1.60E-04
IPR011889
SMART
SM00367
217 248 32 55
IPR006553
Gene3D
G3DSA:3.80.10.10
248 415 168 1.90E-20
IPR032675
PANTHER
PTHR24006
282 408 127 1.90E-54 –
PANTHER
PTHR24006:SF466
282 408 127 1.90E-54 –
SUPERFAMILY
SSF52047
283 415 133 4.19E-14 –
SMART
SM00367
347 372 26 6.5
IPR006553
SMART
SM00367
373 398 26 510
IPR006553
Coils
Coil
442 462 21 – –
Gene3D
G3DSA:3.80.10.10
553 570 18 1.90E-20
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0059909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0059909.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.