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Lj0g3v0065699.1

Overview

Field Value
Gene ID Lj0g3v0065699
Transcript ID Lj0g3v0065699.1
Lotus japonicus genome version MG20 v3.0
Description RAB5B [Lotus japonicus] gi|1370180|emb|CAA98167.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 – –
PANTHER
PTHR24073:SF485
25 188 164 1.90E-99 –
PANTHER
PTHR24073
25 188 164 1.90E-99 –
ProSiteProfiles
PS51419
27 188 162 31.498 –
Gene3D
G3DSA:3.40.50.300
28 188 161 1.30E-63
IPR027417
SUPERFAMILY
SSF52540
29 188 160 6.27E-53
IPR027417
CDD
cd01860
32 188 157 3.85E-105 –
SMART
SM00175
33 188 156 6.00E-71 –
PRINTS
PR00449
33 54 22 1.30E-36 –
TIGRFAM
TIGR00231
33 187 155 3.70E-27
IPR005225
SMART
SM00173
34 188 155 5.10E-20 –
Pfam
PF00071
34 188 155 1.30E-55
IPR001806
SMART
SM00174
35 188 154 1.20E-11 –
PRINTS
PR00449
56 72 17 1.30E-36 –
PRINTS
PR00449
75 97 23 1.30E-36 –
PRINTS
PR00449
137 150 14 1.30E-36 –
PRINTS
PR00449
172 188 17 1.30E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0065699.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0065699.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.