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Lj0g3v0068589.1

Overview

Field Value
Gene ID Lj0g3v0068589
Transcript ID Lj0g3v0068589.1
Lotus japonicus genome version MG20 v3.0
Description Transcription factor [Medicago truncatula] gi|357453385|ref|XP_003596969.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF532
1 186 186 6.30E-65 –
PANTHER
PTHR10641
1 186 186 6.30E-65 –
ProSiteProfiles
PS51294
14 65 52 11.586
IPR017930
SUPERFAMILY
SSF46689
16 112 97 4.69E-26
IPR009057
SMART
SM00717
18 67 50 2.50E-09
IPR001005
Pfam
PF00249
19 65 47 3.20E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
20 72 53 1.90E-18
IPR009057
CDD
cd00167
21 65 45 4.32E-06 –
ProSiteProfiles
PS51294
66 120 55 23.9
IPR017930
SMART
SM00717
70 118 49 1.10E-13
IPR001005
Pfam
PF00249
71 113 43 5.50E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
73 119 47 1.80E-22
IPR009057
CDD
cd00167
75 113 39 7.36E-10 –
MobiDBLite
mobidb-lite
314 341 28 – –
PANTHER
PTHR10641
324 368 45 6.30E-65 –
PANTHER
PTHR10641:SF532
324 368 45 6.30E-65 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0068589.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0068589.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.