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Lj0g3v0069819.1

Overview

Field Value
Gene ID Lj0g3v0069819
Transcript ID Lj0g3v0069819.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum] gi|502137087|ref|XP_004502963.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
ProSiteProfiles
PS50880
1 102 102 15.014
IPR006171
SignalP
SignalP-TM_GRAM_POSITIVE
1 17 17 – –
Pfam
PF01751
24 103 80 1.20E-12
IPR006171
Gene3D
G3DSA:3.40.50.140
37 121 85 2.00E-29
IPR006171
PANTHER
PTHR11390
37 266 230 2.60E-126
IPR000380
PANTHER
PTHR11390:SF21
37 266 230 2.60E-126 –
SUPERFAMILY
SSF56712
39 266 228 7.98E-60
IPR023405
SMART
SM00436
95 196 102 2.50E-29
IPR003601
Pfam
PF01131
121 266 146 7.80E-31
IPR013497
Gene3D
G3DSA:1.10.460.10
124 190 67 1.70E-13
IPR013824
Gene3D
G3DSA:1.10.460.10
237 259 23 1.70E-13
IPR013824

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003916
Molecular function DNA topoisomerase activity Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
Subterm of
GO:0003917
Molecular function DNA topoisomerase type I activity Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
Subterm of
GO:0006265
Biological process DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0069819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0069819.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.