Domain Predictions — View

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PF01751

Source: Pfam

Description

Toprim domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0069819.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum] gi\|502137087\|ref\|XP_004502963.1\|	Domains G3DSA:1.10.460.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR006171 IPR013497 IPR013824 IPR023405 PF01131 PF01751 PS50880 PTHR11390 PTHR11390:SF21 SM00436 SSF56712 SignalP-TM_GRAM_POSITIVE mobidb-lite	17
Lj3g3v0826110.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 2-like [Glycine max] gi\|356555329\|ref\|XP_003545986.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR006171 IPR013757 IPR013758 IPR013759 IPR013760 IPR018522 IPR024946 IPR031660 NON_CYTOPLASMIC_DOMAIN PF00521 PF01751 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF56719 TRANSMEMBRANE cd00187 cd03365 mobidb-lite	35
Lj5g3v0611970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
Lj5g3v0611970.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
LotjaGi1g1v0321800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A0S3RFA9\|A0A0S3RFA9_PHAAN DNA topoisomerase; Found in the gene: LotjaGi1g1v0321800	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 G3DSA:4.10.60.10 IPR000380 IPR001878 IPR003601 IPR003602 IPR006171 IPR010666 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 IPR036875 PF00098 PF01131 PF01396 PF01751 PF06839 PR00417 PS00396 PS50158 PS50880 PTHR11390 PTHR11390:SF21 SM00343 SM00436 SM00437 SM00493 SSF56712 SSF57756 cd00186 cd03362 mobidb-lite	40
LotjaGi1g1v0663600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA gyrase subunit B; TAIR: AT5G04130.1 DNA GYRASE B2; Swiss-Prot: sp\|Q5YLB4\|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A151TTM7\|A0A151TTM7_CAJCA DNA gyrase subunit B; Found in the gene: LotjaGi1g1v0663600	Domains G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 IPR000565 IPR001241 IPR002288 IPR003594 IPR006171 IPR011557 IPR013506 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR034160 IPR036890 NON_CYTOPLASMIC_DOMAIN PF00204 PF00986 PF01751 PF02518 PR00418 PR01159 PS00177 PS50880 PTHR45866 PTHR45866:SF7 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00387 SM00433 SSF54211 SSF55874 SSF56719 TIGR01059 cd00822 cd03366 cd16928	41
LotjaGi3g1v0121000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp\|O24308\|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr\|I1MJQ7\|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000	Domains Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR003594 IPR006171 IPR013506 IPR013757 IPR013758 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR031660 IPR034157 IPR036890 PF00204 PF00521 PF01751 PF02518 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF54211 SSF55874 SSF56719 cd00187 cd03365 cd03481 cd16930 mobidb-lite	45
LotjaGi3g1v0121000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 2; TAIR: AT3G23890.2 topoisomerase II; Swiss-Prot: sp\|O24308\|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr\|I1MJQ7\|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000	Domains Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR003594 IPR006171 IPR013506 IPR013757 IPR013758 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR031660 IPR034157 IPR036890 PF00204 PF00521 PF01751 PF02518 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF54211 SSF55874 SSF56719 cd00187 cd03365 cd03481 cd16930 mobidb-lite	45
LotjaGi5g1v0067100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36
LotjaGi5g1v0067100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36
LotjaGi6g1v0103100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	28
LotjaGi6g1v0103100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.2 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|A0A0R0HWC7\|A0A0R0HWC7_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SSF56712 cd00186 mobidb-lite	25
LotjaGi6g1v0103100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	29
LotjaGi6g1v0103100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SSF56712 cd00186 mobidb-lite	25
LotjaGi6g1v0103100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67