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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0070249 |
| Transcript ID | Lj0g3v0070249.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cicer arietinum] gi|502078188|ref|XP_004485865.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 43 | 35 | 8.331 | ||
| ProSiteProfiles | 44 | 78 | 35 | 6.862 | ||
| Pfam | 51 | 71 | 21 | 0.43 | ||
| ProSiteProfiles | 110 | 145 | 36 | 5.459 | ||
| PANTHER | 127 | 304 | 178 | 0 | – | |
| PANTHER | 127 | 304 | 178 | 0 | – | |
| ProSiteProfiles | 146 | 176 | 31 | 6.665 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.159 | ||
| TIGRFAM | 179 | 212 | 34 | 4.80E-07 | ||
| Pfam | 179 | 209 | 31 | 9.50E-06 | ||
| ProSiteProfiles | 212 | 246 | 35 | 6.588 | ||
| ProSiteProfiles | 247 | 277 | 31 | 8.67 | ||
| TIGRFAM | 249 | 277 | 29 | 2.40E-04 | ||
| Pfam | 250 | 277 | 28 | 0.007 | ||
| Gene3D | 252 | 305 | 54 | 2.80E-10 | ||
| Pfam | 278 | 325 | 48 | 3.70E-10 | ||
| ProSiteProfiles | 278 | 312 | 35 | 11.4 | ||
| TIGRFAM | 280 | 314 | 35 | 1.20E-07 | ||
| ProSiteProfiles | 313 | 347 | 35 | 6.292 | ||
| ProSiteProfiles | 348 | 378 | 31 | 5.031 | ||
| Gene3D | 373 | 396 | 24 | 2.80E-10 | ||
| ProSiteProfiles | 379 | 413 | 35 | 10.534 | ||
| Pfam | 379 | 425 | 47 | 2.10E-08 | ||
| TIGRFAM | 381 | 414 | 34 | 6.30E-05 | ||
| PANTHER | 406 | 515 | 110 | 0 | – | |
| PANTHER | 406 | 515 | 110 | 0 | – | |
| ProSiteProfiles | 414 | 448 | 35 | 7.585 | ||
| ProSiteProfiles | 449 | 479 | 31 | 7.98 | ||
| Gene3D | 452 | 510 | 59 | 2.80E-10 | ||
| Pfam | 454 | 475 | 22 | 0.017 | ||
| ProSiteProfiles | 480 | 514 | 35 | 12.529 | ||
| Pfam | 480 | 527 | 48 | 1.10E-10 | ||
| TIGRFAM | 482 | 515 | 34 | 1.30E-08 | ||
| Gene3D | 547 | 623 | 77 | 2.80E-10 | ||
| ProSiteProfiles | 550 | 580 | 31 | 6.906 | ||
| PANTHER | 551 | 860 | 310 | 0 | – | |
| PANTHER | 551 | 860 | 310 | 0 | – | |
| Pfam | 555 | 576 | 22 | 1 | ||
| Pfam | 580 | 623 | 44 | 3.60E-10 | ||
| ProSiteProfiles | 581 | 615 | 35 | 12.068 | ||
| TIGRFAM | 583 | 616 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 616 | 650 | 35 | 5.974 | ||
| ProSiteProfiles | 651 | 681 | 31 | 7.772 | ||
| Pfam | 681 | 729 | 49 | 1.70E-10 | ||
| ProSiteProfiles | 682 | 716 | 35 | 11.345 | ||
| TIGRFAM | 684 | 715 | 32 | 3.30E-06 | ||
| ProSiteProfiles | 717 | 751 | 35 | 7.848 | ||
| ProSiteProfiles | 753 | 783 | 31 | 6.434 | ||
| ProSiteProfiles | 819 | 853 | 35 | 6.369 | ||
| Pfam | 855 | 978 | 124 | 1.20E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0070249.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0070249.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.