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Lj0g3v0072079.1

Overview

Field Value
Gene ID Lj0g3v0072079
Transcript ID Lj0g3v0072079.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Glycine max] gi|356520247|ref|XP_003528775.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 – –
SUPERFAMILY
SSF46689
18 95 78 1.42E-19
IPR009057
SMART
SM00389
31 97 67 7.80E-16
IPR001356
CDD
cd00086
32 94 63 1.30E-15 –
ProSiteProfiles
PS50071
33 93 61 17.864
IPR001356
PANTHER
PTHR24326
34 137 104 6.00E-64 –
PANTHER
PTHR24326:SF122
34 137 104 6.00E-64 –
Gene3D
G3DSA:1.10.10.60
40 101 62 1.20E-19
IPR009057
Pfam
PF00046
40 91 52 4.20E-16
IPR001356
PRINTS
PR00031
64 73 10 1.00E-05
IPR000047
ProSitePatterns
PS00027
68 91 24 –
IPR017970
PRINTS
PR00031
73 89 17 1.00E-05
IPR000047
Coils
Coil
92 133 42 – –
Pfam
PF02183
93 134 42 8.10E-14
IPR003106
MobiDBLite
mobidb-lite
136 176 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0072079.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0072079.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.