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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017970
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 111 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.012s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072079.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Glycine max] gi|356520247|ref|XP_003528775.1| chr0 26615721 26617426 +
2 domain predictions
2 GO terms
Lj0g3v0083039.1
n.a. homeobox protein knotted-1-like 2-like [Glycine max] gi|388556558|ref|NP_001253999.1| chr0 32735870 32741850 -
2 domain predictions
2 GO terms
Lj0g3v0103139.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT22-like [Glycine max] gi|356541549|ref|XP_003539237.1| chr0 43979335 43981480 +
2 domain predictions
2 GO terms
Lj0g3v0168929.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Cicer arietinum] gi|502140212|ref|XP_004504111.1| chr0 80685917 80687928 +
2 domain predictions
2 GO terms
Lj0g3v0183889.1
n.a. PREDICTED: homeobox protein knotted-1-like 1-like isoform 1 [Glycine max] gi|356535014|ref|XP_003536044.1| chr0 89359129 89365195 +
2 domain predictions
2 GO terms
Lj0g3v0251169.1
n.a. PREDICTED: homeobox-leucine zipper protein ROC6-like [Cicer arietinum] gi|502175726|ref|XP_004515730.1| chr0 130257697 130261810 +
2 domain predictions
2 GO terms
Lj0g3v0262429.2
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 [Cicer arietinum] gi|502171637|ref|XP_004515074.1| chr0 136033908 136039223 -
2 domain predictions
2 GO terms
Lj0g3v0266959.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT7-like [Glycine max] gi|356531784|ref|XP_003534456.1| chr0 138340887 138343913 +
2 domain predictions
2 GO terms
Lj0g3v0279669.1
n.a. Homeobox-leucine zipper protein ATHB-22 [Medicago truncatula] gi|357440243|ref|XP_003590399.1| chr0 145156172 145157526 +
2 domain predictions
2 GO terms
Lj0g3v0360389.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356520461|ref|XP_003528880.1| chr0 189801998 189806224 -
2 domain predictions
2 GO terms
Lj0g3v0360389.2
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cicer arietinum] gi|502157383|ref|XP_004510857.1| chr0 189801998 189806388 -
2 domain predictions
2 GO terms
Lj1g3v0052560.1
n.a. PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera] gi|225444363|ref|XP_002266688.1| chr1 535246 538588 +
2 domain predictions
2 GO terms
Lj1g3v1037350.1
n.a. Homeobox-leucine zipper protein ATHB-7 [Medicago truncatula] gi|357464079|ref|XP_003602321.1| chr1 13025220 13026741 -
2 domain predictions
2 GO terms
Lj1g3v1782140.1
n.a. PREDICTED: homeobox-leucine zipper protein HOX19-like [Glycine max] gi|356509807|ref|XP_003523637.1| chr1 20670572 20672454 +
2 domain predictions
2 GO terms
Lj1g3v2611340.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356532068|ref|XP_003534596.1| chr1 30184549 30192401 -
2 domain predictions
2 GO terms
Lj1g3v4350060.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356530687|ref|XP_003533912.1| chr1 51143540 51145985 +
2 domain predictions
2 GO terms
Lj1g3v4693000.1
n.a. Homeobox-leucine zipper protein ATHB-22 [Medicago truncatula] gi|357440243|ref|XP_003590399.1| chr1 55752367 55758344 -
2 domain predictions
2 GO terms
Lj2g3v1014380.1
n.a. transcription factor Homeobox [Lotus japonicus] gi|193237555|dbj|BAG50054.1| chr2 15594929 15597583 +
2 domain predictions
2 GO terms
Lj2g3v1034880.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT7-like [Cicer arietinum] gi|502090912|ref|XP_004489381.1| chr2 16639142 16641839 -
2 domain predictions
2 GO terms
Lj2g3v1316330.1
n.a. Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1| chr2 20802825 20805428 +
2 domain predictions
2 GO terms
Lj2g3v1327450.1
n.a. Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1| chr2 20866757 20868800 +
2 domain predictions
2 GO terms
Lj2g3v1349130.1
n.a. homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris] gi|15148918|gb|AAK84886.1|AF402605_1 chr2 21156577 21158659 +
2 domain predictions
2 GO terms
Lj2g3v1509550.1
n.a. PREDICTED: homeobox-leucine zipper protein ROC3-like [Glycine max] gi|356529736|ref|XP_003533444.1| chr2 23864293 23869825 -
2 domain predictions
2 GO terms
Lj2g3v1984020.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT22-like [Glycine max] gi|356541549|ref|XP_003539237.1| chr2 28909086 28910533 -
2 domain predictions
2 GO terms
Lj2g3v1989250.1
n.a. Homeobox-leucine zipper protein HOX17 [Medicago truncatula] gi|357482123|ref|XP_003611347.1| chr2 29825512 29827431 -
2 domain predictions
2 GO terms
Lj2g3v2900220.1
n.a. PREDICTED: homeobox protein SBH1-like isoform 1 [Glycine max] gi|356554468|ref|XP_003545568.1| chr2 37693798 37699050 -
2 domain predictions
2 GO terms
Lj3g3v0247270.1
n.a. PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max] gi|356556218|ref|XP_003546423.1| chr3 1464753 1472081 -
2 domain predictions
2 GO terms
Lj3g3v0515110.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT3-like [Glycine max] gi|356504593|ref|XP_003521080.1| chr3 5937976 5941117 -
2 domain predictions
2 GO terms
Lj3g3v0927080.1
n.a. PREDICTED: homeobox-leucine zipper protein HOX27-like [Glycine max] gi|356557110|ref|XP_003546861.1| chr3 10921752 10924111 -
2 domain predictions
2 GO terms
Lj3g3v1338000.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356542838|ref|XP_003539872.1| chr3 17161692 17169474 -
2 domain predictions
2 GO terms
Lj3g3v1338000.2
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356550018|ref|XP_003543387.1| chr3 17161692 17169474 -
2 domain predictions
2 GO terms
Lj3g3v1541360.1
n.a. PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera] gi|225444363|ref|XP_002266688.1| chr3 19748537 19751879 +
2 domain predictions
2 GO terms
Lj4g3v0133580.1
n.a. KNT1 [Glycine max] gi|351734506|ref|NP_001237352.1| chr4 1410523 1414730 +
2 domain predictions
2 GO terms
Lj4g3v1218330.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT4-like [Glycine max] gi|356563350|ref|XP_003549927.1| chr4 18141092 18142531 -
2 domain predictions
2 GO terms
Lj4g3v1218330.2
n.a. PREDICTED: homeobox-leucine zipper protein HAT4-like [Glycine max] gi|356563350|ref|XP_003549927.1| chr4 18141092 18143209 -
2 domain predictions
2 GO terms
Lj4g3v1614670.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT5-like [Glycine max] gi|356562808|ref|XP_003549660.1| chr4 23746854 23750436 -
2 domain predictions
2 GO terms
Lj4g3v2140210.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356550712|ref|XP_003543728.1| chr4 29650696 29651888 +
2 domain predictions
2 GO terms
Lj5g3v2017090.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356535894|ref|XP_003536477.1| chr5 28511890 28517227 -
2 domain predictions
2 GO terms
Lj5g3v2017090.2
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cicer arietinum] gi|502119362|ref|XP_004496593.1| chr5 28511890 28516803 -
2 domain predictions
2 GO terms
Lj6g3v1053520.1
n.a. Homeobox-leucine zipper-like protein [Medicago truncatula] gi|357462199|ref|XP_003601381.1| chr6 12044114 12045708 -
2 domain predictions
2 GO terms
Lj6g3v1053520.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Cicer arietinum] gi|502134198|ref|XP_004502034.1| chr6 12044114 12045708 -
2 domain predictions
2 GO terms
Lj6g3v1300850.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356556274|ref|XP_003546451.1| chr6 15500772 15502631 -
2 domain predictions
2 GO terms
Lj6g3v1812030.1
n.a. Knox class 1 protein [Pisum sativum] gi|3426304|gb|AAC32262.1| chr6 20192094 20197620 +
2 domain predictions
2 GO terms
LotjaGi1g1v0065200.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|V7B6U2|V7B6U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9011829 9017015 +
2 domain predictions
2 GO terms
LotjaGi1g1v0065200.2
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3RK69|A0A0S3RK69_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9011888 9017043 +
2 domain predictions
2 GO terms
LotjaGi1g1v0065200.3
n.a. Homeobox protein; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|K7KB19|K7KB19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9012585 9016691 +
2 domain predictions
2 GO terms
LotjaGi1g1v0279600.1
n.a. Homeobox associated leucine zipper protein; TAIR: AT5G06710.1 homeobox leucine zipper protein; Swiss-Prot: sp|P46665|HAT14_ARATH Homeobox-leucine zipper protein HAT14; TrEMBL-Plants: tr|I1L2K9|I1L2K9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279600 LjG1.1_chr1 68230913 68233671 -
2 domain predictions
2 GO terms
LotjaGi1g1v0293900.1
n.a. Homeobox protein; TAIR: AT2G46680.1 homeobox 7; Swiss-Prot: sp|P46897|ATHB7_ARATH Homeobox-leucine zipper protein ATHB-7; TrEMBL-Plants: tr|A0A0S3RDW7|A0A0S3RDW7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0293900 LjG1.1_chr1 71220987 71223675 -
2 domain predictions
2 GO terms
LotjaGi1g1v0364700.1
n.a. Homeobox associated leucine zipper protein; TAIR: AT4G37790.1 Homeobox-leucine zipper protein family; Swiss-Prot: sp|A2XE76|HOX19_ORYSI Homeobox-leucine zipper protein HOX19; TrEMBL-Plants: tr|A0A151TTF7|A0A151TTF7_CAJCA Homeobox-leucine zipper protein HOX19; Found in the gene: LotjaGi1g1v0364700 LjG1.1_chr1 84216156 84218629 +
2 domain predictions
2 GO terms
LotjaGi1g1v0468000.1
n.a. Homeobox leucine zipper protein; TAIR: AT4G00730.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2; TrEMBL-Plants: tr|A0A0S3RT53|A0A0S3RT53_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0468000 LjG1.1_chr1 97799738 97807921 -
2 domain predictions
2 GO terms