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Lj0g3v0073769.1

Overview

Field Value
Gene ID Lj0g3v0073769
Transcript ID Lj0g3v0073769.1
Lotus japonicus genome version MG20 v3.0
Description RAB1A [Lotus japonicus] gi|1370162|emb|CAA66447.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073:SF490
1 136 136 3.40E-110 –
PANTHER
PTHR24073
1 136 136 3.40E-110 –
Gene3D
G3DSA:3.40.50.300
3 135 133 9.20E-55
IPR027417
ProSiteProfiles
PS51419
4 136 133 28.755 –
SUPERFAMILY
SSF52540
5 134 130 9.46E-49
IPR027417
SMART
SM00173
6 136 131 1.40E-07 –
TIGRFAM
TIGR00231
7 133 127 1.90E-27
IPR005225
SMART
SM00175
9 136 128 6.40E-57 –
PRINTS
PR00449
9 30 22 1.10E-30 –
Pfam
PF00071
10 136 127 7.30E-49
IPR001806
SMART
SM00174
11 136 126 3.20E-08 –
PRINTS
PR00449
32 48 17 1.10E-30 –
PRINTS
PR00449
50 72 23 1.10E-30 –
PRINTS
PR00449
112 125 14 1.10E-30 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0073769.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0073769.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.