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Lj0g3v0074009.1

Overview

Field Value
Gene ID Lj0g3v0074009
Transcript ID Lj0g3v0074009.1
Lotus japonicus genome version MG20 v3.0
Description RAB8E [Lotus japonicus] gi|1370198|emb|CAA98176.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 181 181 0.0029 –
PANTHER
PTHR24073:SF541
8 215 208 3.60E-163 –
Gene3D
G3DSA:3.40.50.300
8 214 207 5.50E-78
IPR027417
PANTHER
PTHR24073
8 215 208 3.60E-163 –
SUPERFAMILY
SSF52540
11 186 176 5.32E-64
IPR027417
ProSiteProfiles
PS51419
11 214 204 38.28 –
CDD
cd01867
13 180 168 8.28E-118 –
TIGRFAM
TIGR00231
14 170 157 9.60E-32
IPR005225
PRINTS
PR00449
16 37 22 7.80E-47 –
SMART
SM00175
16 180 165 1.80E-106 –
Pfam
PF00071
17 178 162 6.40E-66
IPR001806
SMART
SM00173
17 180 164 2.30E-36 –
SMART
SM00174
18 180 163 8.10E-14 –
SMART
SM00176
21 215 195 8.30E-07 –
PRINTS
PR00449
39 55 17 7.80E-47 –
PRINTS
PR00449
57 79 23 7.80E-47 –
PRINTS
PR00449
119 132 14 7.80E-47 –
PRINTS
PR00449
155 177 23 7.80E-47 –
MobiDBLite
mobidb-lite
182 215 34 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj0g3v0074009.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0074009.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.