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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0084789 |
| Transcript ID | Lj0g3v0084789.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Cicer arietinum] gi|502165633|ref|XP_004513641.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 124 | 393 | 270 | 0 | – | |
| PANTHER | 124 | 393 | 270 | 0 | – | |
| ProSiteProfiles | 125 | 155 | 31 | 9.339 | ||
| TIGRFAM | 127 | 155 | 29 | 4.00E-04 | ||
| Pfam | 127 | 154 | 28 | 2.90E-04 | ||
| ProSiteProfiles | 157 | 192 | 36 | 10.326 | ||
| Pfam | 157 | 204 | 48 | 9.50E-11 | ||
| ProSiteProfiles | 227 | 257 | 31 | 5.963 | ||
| Pfam | 231 | 254 | 24 | 0.26 | ||
| ProSiteProfiles | 260 | 294 | 35 | 11.345 | ||
| Pfam | 260 | 306 | 47 | 2.70E-09 | ||
| TIGRFAM | 262 | 294 | 33 | 2.20E-06 | ||
| ProSiteProfiles | 327 | 357 | 31 | 6.358 | ||
| Pfam | 358 | 402 | 45 | 1.80E-09 | ||
| ProSiteProfiles | 358 | 392 | 35 | 9.997 | ||
| TIGRFAM | 360 | 394 | 35 | 0.001 | ||
| ProSiteProfiles | 424 | 458 | 35 | 8.561 | ||
| Gene3D | 425 | 451 | 27 | 1.10E-07 | ||
| PANTHER | 425 | 735 | 311 | 0 | – | |
| PANTHER | 425 | 735 | 311 | 0 | – | |
| Pfam | 428 | 449 | 22 | 0.0013 | ||
| TIGRFAM | 428 | 449 | 22 | 0.0013 | ||
| Gene3D | 483 | 484 | 2 | 1.10E-07 | ||
| ProSiteProfiles | 490 | 524 | 35 | 6.16 | ||
| ProSiteProfiles | 525 | 555 | 31 | 6.982 | ||
| Gene3D | 528 | 600 | 73 | 1.10E-07 | ||
| Pfam | 530 | 555 | 26 | 0.047 | ||
| ProSiteProfiles | 556 | 591 | 36 | 9.788 | ||
| Pfam | 556 | 604 | 49 | 7.20E-12 | ||
| TIGRFAM | 558 | 592 | 35 | 2.70E-06 | ||
| ProSiteProfiles | 592 | 627 | 36 | 7.969 | ||
| Gene3D | 668 | 715 | 48 | 1.10E-07 | ||
| ProSiteProfiles | 694 | 728 | 35 | 8.67 | ||
| Pfam | 697 | 725 | 29 | 0.17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0084789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0084789.1, powered by CORGI.
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