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Lj0g3v0085679.2

Overview

Field Value
Gene ID Lj0g3v0085679
Transcript ID Lj0g3v0085679.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description phototropin [Vicia faba] gi|24899170|dbj|BAC23099.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 127 127 – –
ProSiteProfiles
PS50112
128 201 74 11.391
IPR000014
Gene3D
G3DSA:3.30.450.20
142 246 105 2.10E-34 –
SUPERFAMILY
SSF55785
149 241 93 1.27E-24
IPR000014
Pfam
PF13426
149 245 97 4.80E-19
IPR000014
CDD
cd00130
155 244 90 3.41E-09 –
TIGRFAM
TIGR00229
155 249 95 1.10E-12
IPR000014
ProSiteProfiles
PS50113
202 256 55 12.607
IPR000700
SMART
SM00086
205 247 43 1.80E-06
IPR001610
MobiDBLite
mobidb-lite
270 360 91 – –
PANTHER
PTHR24351
303 463 161 4.00E-50 –
PANTHER
PTHR24351:SF29
303 463 161 4.00E-50 –
ProSiteProfiles
PS50112
411 463 53 9.556
IPR000014
Gene3D
G3DSA:3.30.450.20
425 462 38 5.10E-09 –
CDD
cd00130
426 460 35 0.00852743 –
SUPERFAMILY
SSF55785
427 462 36 2.23E-06
IPR000014
Pfam
PF13426
434 462 29 6.70E-05
IPR000014

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0085679.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0085679.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.