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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000700
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.576s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0085679.2
n.a. phototropin [Vicia faba] gi|24899170|dbj|BAC23099.1| chr0 34307863 34316486 -
2 domain predictions
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Lj0g3v0090469.3
n.a. PREDICTED: phototropin-2-like [Glycine max] gi|356559155|ref|XP_003547866.1| chr0 37291001 37305612 -
2 domain predictions
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Lj3g3v3117660.1
n.a. phototropin [Phaseolus vulgaris] gi|60099454|dbj|BAD89966.1| chr3 38948454 38962364 +
2 domain predictions
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Lj3g3v3117660.5
n.a. phototropin [Phaseolus vulgaris] gi|60099454|dbj|BAD89966.1| chr3 38949717 38962364 +
2 domain predictions
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LotjaGi2g1v0365900.1
n.a. Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|Q5DW44|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900 LjG1.1_chr2 86340257 86353814 +
2 domain predictions
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LotjaGi2g1v0365900.2
n.a. Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|Q5DW44|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900 LjG1.1_chr2 86340413 86353473 +
2 domain predictions
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LotjaGi3g1v0276600.1
n.a. Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 LjG1.1_chr3 54921747 54942088 +
2 domain predictions
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LotjaGi3g1v0276600.2
n.a. Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 LjG1.1_chr3 54921747 54942091 +
2 domain predictions
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LotjaGi3g1v0276600.3
n.a. Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 LjG1.1_chr3 54922270 54940770 +
2 domain predictions
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LotjaGi4g1v0149200.1
n.a. Protein kinase family protein; TAIR: AT5G58140.1 phototropin 2; Swiss-Prot: sp|P93025|PHOT2_ARATH Phototropin-2; TrEMBL-Plants: tr|K7MGJ3|K7MGJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0149200 LjG1.1_chr4 24345847 24369973 +
2 domain predictions
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