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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0089779 |
| Transcript ID | Lj0g3v0089779.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | protein BRCA2-like B [Arabidopsis thaliana] gi|42567571|ref|NP_195783.3| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 73 | 1063 | 991 | 1.70E-300 | ||
| PANTHER | 73 | 1063 | 991 | 1.70E-300 | – | |
| ProSiteProfiles | 178 | 212 | 35 | 9.485 | ||
| Pfam | 181 | 210 | 30 | 6.10E-08 | ||
| MobiDBLite | 302 | 322 | 21 | – | – | |
| SUPERFAMILY | 410 | 540 | 131 | 7.85E-38 | ||
| Pfam | 461 | 538 | 78 | 1.50E-17 | ||
| Gene3D | 541 | 668 | 128 | 4.70E-41 | – | |
| SUPERFAMILY | 541 | 668 | 128 | 8.14E-37 | ||
| Pfam | 542 | 666 | 125 | 1.90E-37 | ||
| CDD | 554 | 666 | 113 | 9.64E-41 | – | |
| SUPERFAMILY | 673 | 702 | 30 | 9.42E-22 | ||
| Gene3D | 674 | 701 | 28 | 2.40E-12 | – | |
| SUPERFAMILY | 703 | 819 | 117 | 1.06E-17 | – | |
| Gene3D | 818 | 893 | 76 | 2.40E-12 | – | |
| SUPERFAMILY | 820 | 903 | 84 | 9.42E-22 | ||
| SUPERFAMILY | 912 | 1062 | 151 | 2.23E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of Lj0g3v0089779.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0089779.1, powered by CORGI.
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