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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0101269 |
| Transcript ID | Lj0g3v0101269.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g13880-like isoform X1 [Cicer arietinum] gi|502091464|ref|XP_004489557.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 282 | 242 | 0 | – | |
| PANTHER | 41 | 282 | 242 | 0 | – | |
| ProSiteProfiles | 108 | 138 | 31 | 6.303 | ||
| Pfam | 111 | 133 | 23 | 0.08 | ||
| Pfam | 139 | 187 | 49 | 2.50E-07 | ||
| ProSiteProfiles | 139 | 174 | 36 | 10.83 | ||
| TIGRFAM | 141 | 172 | 32 | 2.80E-04 | ||
| ProSiteProfiles | 211 | 241 | 31 | 5.93 | ||
| ProSiteProfiles | 242 | 281 | 40 | 6.928 | ||
| Pfam | 243 | 293 | 51 | 1.40E-07 | ||
| ProSiteProfiles | 282 | 316 | 35 | 7.563 | ||
| PANTHER | 318 | 627 | 310 | 0 | – | |
| PANTHER | 318 | 627 | 310 | 0 | – | |
| Gene3D | 322 | 492 | 171 | 5.20E-04 | ||
| ProSiteProfiles | 348 | 382 | 35 | 11.63 | ||
| Pfam | 350 | 378 | 29 | 3.40E-05 | ||
| TIGRFAM | 350 | 384 | 35 | 2.70E-07 | ||
| ProSiteProfiles | 418 | 448 | 31 | 5.229 | ||
| ProSiteProfiles | 449 | 483 | 35 | 10.457 | ||
| Pfam | 451 | 481 | 31 | 0.0037 | ||
| TIGRFAM | 451 | 484 | 34 | 0.0016 | ||
| ProSiteProfiles | 484 | 514 | 31 | 6.862 | ||
| Pfam | 491 | 514 | 24 | 0.53 | ||
| Gene3D | 528 | 609 | 82 | 5.20E-04 | ||
| ProSiteProfiles | 586 | 620 | 35 | 7.322 | ||
| Pfam | 622 | 746 | 125 | 1.00E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0101269.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0101269.1, powered by CORGI.
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