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Lj0g3v0102879.1

Overview

Field	Value
Gene ID	Lj0g3v0102879
Transcript ID	Lj0g3v0102879.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: zinc finger protein 593-like [Cucumis sativus] gi\|449451052\|ref\|XP_004143276.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR20863:SF2 View details on PTHR20863:SF2 Search for proteins/transripts with this domain View external data on PTHR20863:SF2	1	115	115	4.60E-62	–
PANTHER	PTHR20863 View details on PTHR20863 Search for proteins/transripts with this domain View external data on PTHR20863	1	115	115	4.60E-62	–
SUPERFAMILY	SSF57667 View details on SSF57667 Search for proteins/transripts with this domain View external data on SSF57667	46	110	65	7.67E-18	–
SMART	SM00451 View details on SM00451 Search for proteins/transripts with this domain View external data on SM00451	56	90	35	8.30E-08	IPR003604 Show description in modal box View details on IPR003604 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12171 View details on PF12171 Search for proteins/transripts with this domain View external data on PF12171	58	84	27	6.00E-09	IPR022755 Show description in modal box View details on IPR022755 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50157 View details on PS50157 Search for proteins/transripts with this domain View external data on PS50157	59	88	30	8.6	IPR007087 Show description in modal box View details on IPR007087 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00028 View details on PS00028 Search for proteins/transripts with this domain View external data on PS00028	61	83	23	–	IPR007087 Show description in modal box View details on IPR007087 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0102879.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0102879.1, powered by CORGI.

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