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Lj0g3v0103139.1

Overview

Field Value
Gene ID Lj0g3v0103139
Transcript ID Lj0g3v0103139.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HAT22-like [Glycine max] gi|356541549|ref|XP_003539237.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
22 64 43 – –
PANTHER
PTHR24326
48 77 30 5.30E-103 –
PANTHER
PTHR24326:SF252
48 77 30 5.30E-103 –
MobiDBLite
mobidb-lite
91 119 29 – –
PANTHER
PTHR24326
103 261 159 5.30E-103 –
PANTHER
PTHR24326:SF252
103 261 159 5.30E-103 –
SUPERFAMILY
SSF46689
128 191 64 1.13E-18
IPR009057
ProSiteProfiles
PS50071
130 190 61 17.556
IPR001356
SMART
SM00389
132 194 63 6.30E-16
IPR001356
Gene3D
G3DSA:1.10.10.60
134 188 55 4.50E-18
IPR009057
Pfam
PF00046
134 188 55 1.50E-16
IPR001356
CDD
cd00086
134 191 58 5.41E-17 –
ProSitePatterns
PS00027
165 188 24 –
IPR017970
Pfam
PF02183
190 224 35 4.40E-10
IPR003106
SMART
SM00340
190 232 43 4.30E-21
IPR003106
Coils
Coil
196 226 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0103139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0103139.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.