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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0105249 |
| Transcript ID | Lj0g3v0105249.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g33680-like [Cicer arietinum] gi|502171226|ref|XP_004515015.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 0 | – | |
| ProSiteProfiles | 1 | 24 | 24 | 7.651 | ||
| PANTHER | 1 | 131 | 131 | 0 | – | |
| Pfam | 1 | 23 | 23 | 6.60E-04 | ||
| ProSiteProfiles | 30 | 64 | 35 | 5.689 | ||
| ProSiteProfiles | 65 | 95 | 31 | 5.831 | ||
| Pfam | 70 | 90 | 21 | 0.49 | ||
| Pfam | 95 | 142 | 48 | 1.90E-10 | ||
| Gene3D | 96 | 118 | 23 | 3.40E-05 | ||
| ProSiteProfiles | 96 | 130 | 35 | 12.54 | ||
| TIGRFAM | 98 | 131 | 34 | 8.30E-09 | ||
| ProSiteProfiles | 166 | 196 | 31 | 5.853 | ||
| PANTHER | 167 | 476 | 310 | 0 | – | |
| PANTHER | 167 | 476 | 310 | 0 | – | |
| Gene3D | 185 | 254 | 70 | 3.40E-05 | ||
| Pfam | 196 | 244 | 49 | 1.70E-10 | ||
| ProSiteProfiles | 197 | 231 | 35 | 11.093 | ||
| TIGRFAM | 199 | 233 | 35 | 6.30E-07 | ||
| ProSiteProfiles | 232 | 266 | 35 | 6.336 | ||
| ProSiteProfiles | 267 | 297 | 31 | 5.338 | ||
| Pfam | 298 | 345 | 48 | 5.50E-13 | ||
| ProSiteProfiles | 298 | 332 | 35 | 12.649 | ||
| TIGRFAM | 300 | 334 | 35 | 5.50E-09 | ||
| Gene3D | 301 | 396 | 96 | 3.40E-05 | ||
| ProSiteProfiles | 333 | 363 | 31 | 8.199 | ||
| TIGRFAM | 335 | 369 | 35 | 0.0019 | ||
| ProSiteProfiles | 369 | 404 | 36 | 7.059 | ||
| Pfam | 373 | 394 | 22 | 1.3 | ||
| Gene3D | 429 | 454 | 26 | 3.40E-05 | ||
| ProSiteProfiles | 435 | 469 | 35 | 7.388 | ||
| Pfam | 471 | 519 | 49 | 1.10E-06 | ||
| MobiDBLite | 516 | 535 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0105249.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0105249.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.