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Lj0g3v0113959.1

Overview

Field Value
Gene ID Lj0g3v0113959
Transcript ID Lj0g3v0113959.1
Lotus japonicus genome version MG20 v3.0
Description Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357486633|ref|XP_003613604.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015
1 264 264 1.40E-146 –
PANTHER
PTHR24015:SF541
1 264 264 1.40E-146 –
ProSiteProfiles
PS51375
1 29 29 6.182
IPR002885
Gene3D
G3DSA:1.25.40.10
27 92 66 4.00E-05
IPR011990
Pfam
PF13041
30 77 48 6.70E-16
IPR002885
ProSiteProfiles
PS51375
30 64 35 12.156
IPR002885
TIGRFAM
TIGR00756
32 65 34 2.90E-09
IPR002885
ProSiteProfiles
PS51375
65 99 35 11.071
IPR002885
TIGRFAM
TIGR00756
68 97 30 2.00E-07
IPR002885
Gene3D
G3DSA:1.25.40.10
128 261 134 4.00E-05
IPR011990
ProSiteProfiles
PS51375
135 165 31 5.623
IPR002885
ProSiteProfiles
PS51375
168 202 35 12.463
IPR002885
Pfam
PF13041
171 215 45 5.90E-12
IPR002885
TIGRFAM
TIGR00756
172 203 32 8.50E-08
IPR002885
ProSiteProfiles
PS51375
203 238 36 9.251
IPR002885
TIGRFAM
TIGR00756
205 238 34 7.90E-05
IPR002885
ProSiteProfiles
PS51375
239 264 26 6.895
IPR002885
Pfam
PF01535
243 263 21 0.62
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0113959.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0113959.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.