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Lj0g3v0115219.1

Overview

Field Value
Gene ID Lj0g3v0115219
Transcript ID Lj0g3v0115219.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcriptional activator Myb-like [Glycine max] gi|356570355|ref|XP_003553355.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 43 43 – –
PANTHER
PTHR10641:SF473
25 222 198 2.00E-93 –
PANTHER
PTHR10641
25 222 198 2.00E-93 –
ProSiteProfiles
PS51294
49 100 52 18.231
IPR017930
SMART
SM00717
53 102 50 1.00E-14
IPR001005
SUPERFAMILY
SSF46689
53 147 95 1.42E-28
IPR009057
Pfam
PF00249
54 99 46 1.10E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
55 107 53 1.10E-26
IPR009057
CDD
cd00167
57 98 42 1.51E-14 –
ProSiteProfiles
PS51294
101 155 55 25.933
IPR017930
SMART
SM00717
105 153 49 3.00E-14
IPR001005
Pfam
PF00249
106 149 44 8.20E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
108 153 46 1.50E-19
IPR009057
CDD
cd00167
108 151 44 9.79E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0115219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0115219.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.