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Lj0g3v0116199.1

Overview

Field Value
Gene ID Lj0g3v0116199
Transcript ID Lj0g3v0116199.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50729
1 155 155 7.13E-36
IPR011993
PRINTS
PR00887
45 58 14 1.20E-31
IPR000969
PANTHER
PTHR13711
53 190 138 3.50E-49 –
PANTHER
PTHR13711:SF199
53 190 138 3.50E-49 –
CDD
cd13231
58 157 100 1.01E-31 –
SMART
SM01287
64 157 94 1.10E-20
IPR013719
Pfam
PF08512
65 154 90 1.00E-18
IPR013719
PRINTS
PR00887
72 90 19 1.20E-31
IPR000969
PRINTS
PR00887
90 107 18 1.20E-31
IPR000969
PRINTS
PR00887
116 132 17 1.20E-31
IPR000969
PRINTS
PR00887
132 150 19 1.20E-31
IPR000969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0116199.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0116199.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.