Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

cd13231

Source: CDD

Description

PH2_SSRP1-like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0116189.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi\|356496334\|ref\|XP_003517023.1\|	Domains IPR000969 IPR011993 IPR013719 IPR024954 PF03531 PF08512 PR00887 PTHR13711 PTHR13711:SF201 SM01287 SSF50729 cd13230 cd13231	13
Lj0g3v0116199.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi\|356496334\|ref\|XP_003517023.1\|	Domains IPR000969 IPR011993 IPR013719 PF08512 PR00887 PTHR13711 PTHR13711:SF199 SM01287 SSF50729 cd13231	10
Lj0g3v0332269.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi\|356496334\|ref\|XP_003517023.1\|	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 PF00505 PF03531 PF08512 PR00887 PS50118 PTHR13711 PTHR13711:SF199 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	22
Lj1g3v3556890.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi\|356496334\|ref\|XP_003517023.1\|	Domains G3DSA:1.10.30.10 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 PF00505 PF03531 PF08512 PR00887 PS50118 PTHR13711 PTHR13711:SF199 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	21
Lj2g3v1034620.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi\|356496334\|ref\|XP_003517023.1\|	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 PF00505 PF03531 PF08512 PR00887 PS50118 PTHR13711 PTHR13711:SF199 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	22
LotjaGi1g1v0589200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC	Domains G3DSA:2.30.29.150 G3DSA:2.30.29.30 IPR000969 IPR011993 IPR013719 PF08512 PR00887 PTHR45849 PTHR45849:SF2 SM01287 SSF50729 cd13230 cd13231 mobidb-lite	14
LotjaGi1g1v0589200_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.150 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR036910 PF00505 PF08512 PR00887 PS50118 PTHR45849 PTHR45849:SF2 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	22
LotjaGi2g1v0081600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 IPR035417 IPR036910 IPR038167 PF00505 PF03531 PF08512 PF17292 PR00887 PS50118 PTHR45849 PTHR45849:SF2 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	28
LotjaGi2g1v0081600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|A0A0L9VP68\|A0A0L9VP68_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600	Domains G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR011993 IPR013719 IPR024954 IPR035417 IPR038167 PF03531 PF08512 PF17292 PR00887 PTHR45849 PTHR45849:SF2 SM01287 SSF50729 cd13230 cd13231	19
LotjaGi2g1v0081600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600	Domains G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR011993 IPR013719 IPR024954 IPR035417 IPR038167 PF03531 PF08512 PF17292 PR00887 PTHR45849 PTHR45849:SF2 SM01287 SSF50729 cd13230 cd13231 mobidb-lite	20
LotjaGi2g1v0256800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 IPR035417 IPR036910 IPR038167 PF00505 PF03531 PF08512 PF17292 PR00887 PS50118 PTHR45849 PTHR45849:SF2 SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	28
LotjaGi2g1v0256800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|A0A151S4Y7\|A0A151S4Y7_CAJCA FACT complex subunit SSRP1; Found in the gene: LotjaGi2g1v0256800	Domains G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR011993 IPR013719 IPR024954 IPR035417 IPR038167 PF03531 PF08512 PF17292 PR00887 PTHR45849 PTHR45849:SF2 SM01287 SSF50729 cd13230 cd13231 mobidb-lite	20
LotjaGi2g1v0256800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|A0A0R0KM01\|A0A0R0KM01_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 IPR036910 IPR038167 NON_CYTOPLASMIC_DOMAIN PF00505 PF03531 PF08512 PR00887 PS50118 PTHR45849 PTHR45849:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	31
LotjaGi2g1v0256800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp\|O04235\|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr\|I1J7R6\|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800	Domains G3DSA:1.10.30.10 G3DSA:2.30.29.150 G3DSA:2.30.29.220 G3DSA:2.30.29.30 IPR000969 IPR009071 IPR011993 IPR013719 IPR024954 IPR036910 IPR038167 NON_CYTOPLASMIC_DOMAIN PF00505 PF03531 PF08512 PR00887 PS50118 PTHR45849 PTHR45849:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00398 SM01287 SSF47095 SSF50729 cd01390 cd13230 cd13231 mobidb-lite	31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14