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PR00887

Source: PRINTS

Description

Structure-specific recognition protein signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj0g3v0116189.1
– PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Domains
13
Lj0g3v0116199.1
– PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Domains
10
Lj0g3v0332269.2
– PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Domains
22
Lj1g3v3556890.1
– PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Domains
21
Lj2g3v1034620.1
– PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Domains
22
LotjaGi1g1v0589200_LC.1
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC
Domains
14
LotjaGi1g1v0589200_LC.3
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC
Domains
22
LotjaGi2g1v0081600.1
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600
Domains
28
LotjaGi2g1v0081600.2
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A0L9VP68|A0A0L9VP68_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600
Domains
19
LotjaGi2g1v0081600.3
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600
Domains
20
LotjaGi2g1v0256800.1
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800
Domains
28
LotjaGi2g1v0256800.2
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A151S4Y7|A0A151S4Y7_CAJCA FACT complex subunit SSRP1; Found in the gene: LotjaGi2g1v0256800
Domains
20
LotjaGi2g1v0256800.3
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A0R0KM01|A0A0R0KM01_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800
Domains
31
LotjaGi2g1v0256800.4
– FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800
Domains
31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14