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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0116259 |
| Transcript ID | Lj0g3v0116259.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide/nitrate transporter At3g53960-like [Glycine max] gi|356496092|ref|XP_003516904.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 55 | 55 | – | – | |
| PANTHER | 13 | 595 | 583 | 0 | – | |
| PANTHER | 13 | 595 | 583 | 0 | ||
| SUPERFAMILY | 35 | 253 | 219 | 1.83E-27 | ||
| CDD | 45 | 246 | 202 | 9.17E-05 | ||
| Gene3D | 52 | 249 | 198 | 1.90E-11 | – | |
| Phobius | 56 | 74 | 19 | – | – | |
| Phobius | 75 | 85 | 11 | – | – | |
| TMHMM | 84 | 106 | 23 | – | – | |
| Phobius | 86 | 106 | 21 | – | – | |
| Phobius | 107 | 111 | 5 | – | – | |
| Pfam | 109 | 533 | 425 | 1.70E-87 | ||
| TMHMM | 111 | 133 | 23 | – | – | |
| Phobius | 112 | 132 | 21 | – | – | |
| Phobius | 133 | 197 | 65 | – | – | |
| TMHMM | 195 | 217 | 23 | – | – | |
| Phobius | 198 | 217 | 20 | – | – | |
| Phobius | 218 | 222 | 5 | – | – | |
| TMHMM | 221 | 243 | 23 | – | – | |
| Phobius | 223 | 243 | 21 | – | – | |
| Phobius | 244 | 337 | 94 | – | – | |
| SUPERFAMILY | 326 | 572 | 247 | 1.83E-27 | ||
| Phobius | 338 | 364 | 27 | – | – | |
| TMHMM | 342 | 364 | 23 | – | – | |
| Phobius | 365 | 383 | 19 | – | – | |
| TMHMM | 379 | 401 | 23 | – | – | |
| Phobius | 384 | 401 | 18 | – | – | |
| Phobius | 402 | 420 | 19 | – | – | |
| TMHMM | 420 | 442 | 23 | – | – | |
| Phobius | 421 | 442 | 22 | – | – | |
| Phobius | 443 | 461 | 19 | – | – | |
| TMHMM | 462 | 484 | 23 | – | – | |
| Gene3D | 462 | 568 | 107 | 3.30E-05 | – | |
| Phobius | 462 | 489 | 28 | – | – | |
| Phobius | 490 | 500 | 11 | – | – | |
| TMHMM | 500 | 522 | 23 | – | – | |
| Phobius | 501 | 522 | 22 | – | – | |
| Phobius | 523 | 545 | 23 | – | – | |
| TMHMM | 546 | 565 | 20 | – | – | |
| Phobius | 546 | 565 | 20 | – | – | |
| Phobius | 566 | 595 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0116259.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0116259.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.