Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0125239.1

Overview

Field Value
Gene ID Lj0g3v0125239
Transcript ID Lj0g3v0125239.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis vinifera] gi|225457931|ref|XP_002273443.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 39 39 – –
PANTHER
PTHR24031
1 52 52 2.20E-146 –
PANTHER
PTHR24031:SF277
1 52 52 2.20E-146 –
MobiDBLite
mobidb-lite
73 110 38 – –
PANTHER
PTHR24031:SF277
80 286 207 2.20E-146 –
PANTHER
PTHR24031
80 286 207 2.20E-146 –
Gene3D
G3DSA:3.40.50.300
115 286 172 3.50E-62
IPR027417
SUPERFAMILY
SSF52540
119 286 168 1.23E-51
IPR027417
ProSiteProfiles
PS51195
123 151 29 11.385
IPR014014
CDD
cd00268
125 286 162 1.05E-75 –
SMART
SM00487
142 286 145 2.40E-24
IPR014001
Pfam
PF00270
147 286 140 1.00E-37
IPR011545
ProSiteProfiles
PS51192
154 286 133 22.858
IPR014001
ProSitePatterns
PS00039
274 282 9 –
IPR000629

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0125239.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0125239.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.