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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0125449 |
| Transcript ID | Lj0g3v0125449.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357495039|ref|XP_003617808.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 43 | 77 | 35 | 6.939 | ||
| PANTHER | 55 | 346 | 292 | 0 | – | |
| PANTHER | 55 | 346 | 292 | 0 | – | |
| ProSiteProfiles | 78 | 108 | 31 | 7.454 | ||
| Pfam | 82 | 105 | 24 | 0.031 | ||
| ProSiteProfiles | 109 | 143 | 35 | 8.1 | ||
| ProSiteProfiles | 144 | 178 | 35 | 5.042 | ||
| ProSiteProfiles | 179 | 209 | 31 | 6.862 | ||
| Pfam | 184 | 204 | 21 | 0.081 | ||
| Gene3D | 187 | 260 | 74 | 5.30E-07 | ||
| ProSiteProfiles | 210 | 244 | 35 | 10.556 | ||
| Pfam | 212 | 241 | 30 | 7.20E-04 | ||
| TIGRFAM | 212 | 245 | 34 | 7.40E-06 | ||
| ProSiteProfiles | 280 | 310 | 31 | 7.476 | ||
| Pfam | 310 | 358 | 49 | 1.10E-08 | ||
| ProSiteProfiles | 311 | 345 | 35 | 10.589 | ||
| ProSiteProfiles | 346 | 380 | 35 | 5.514 | ||
| ProSiteProfiles | 381 | 411 | 31 | 7.004 | ||
| PANTHER | 382 | 691 | 310 | 0 | – | |
| PANTHER | 382 | 691 | 310 | 0 | – | |
| Gene3D | 384 | 442 | 59 | 5.30E-07 | ||
| Pfam | 386 | 407 | 22 | 0.41 | ||
| Pfam | 412 | 459 | 48 | 2.80E-12 | ||
| ProSiteProfiles | 412 | 446 | 35 | 11.849 | ||
| TIGRFAM | 414 | 447 | 34 | 1.40E-07 | ||
| ProSiteProfiles | 447 | 481 | 35 | 5.229 | ||
| Gene3D | 479 | 551 | 73 | 5.30E-07 | ||
| ProSiteProfiles | 482 | 512 | 31 | 8.977 | ||
| TIGRFAM | 487 | 512 | 26 | 9.30E-04 | ||
| Pfam | 487 | 512 | 26 | 0.0023 | ||
| ProSiteProfiles | 513 | 547 | 35 | 11.641 | ||
| Pfam | 515 | 560 | 46 | 5.90E-12 | ||
| TIGRFAM | 515 | 548 | 34 | 2.40E-08 | ||
| ProSiteProfiles | 548 | 583 | 36 | 7.607 | ||
| ProSiteProfiles | 584 | 618 | 35 | 6.632 | ||
| Pfam | 587 | 611 | 25 | 0.013 | ||
| Gene3D | 614 | 650 | 37 | 5.30E-07 | ||
| ProSiteProfiles | 650 | 684 | 35 | 7.498 | ||
| Pfam | 686 | 810 | 125 | 8.70E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0125449.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0125449.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.