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Lj0g3v0127869.1

Overview

Field Value
Gene ID Lj0g3v0127869
Transcript ID Lj0g3v0127869.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like isoform X2 [Cicer arietinum] gi|502132980|ref|XP_004501604.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12383:SF15
119 162 44 1.40E-131 –
PANTHER
PTHR12383
119 162 44 1.40E-131
IPR000223
PANTHER
PTHR12383:SF15
178 352 175 1.40E-131 –
PANTHER
PTHR12383
178 352 175 1.40E-131
IPR000223
TIGRFAM
TIGR02227
203 352 150 8.50E-34
IPR000223
Gene3D
G3DSA:2.10.109.10
213 287 75 9.80E-31
IPR028360
SUPERFAMILY
SSF51306
216 352 137 9.42E-43
IPR015927
PRINTS
PR00727
217 233 17 2.50E-18
IPR000223
CDD
cd06530
220 352 133 2.53E-22 –
ProSitePatterns
PS00501
226 233 8 –
IPR019756
Pfam
PF10502
251 352 102 9.50E-12
IPR019533
PRINTS
PR00727
277 289 13 2.50E-18
IPR000223
PRINTS
PR00727
321 340 20 2.50E-18
IPR000223
Gene3D
G3DSA:2.10.109.10
321 352 32 9.80E-31
IPR028360
ProSitePatterns
PS00761
326 339 14 –
IPR019758

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008236
Molecular function Serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0127869.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0127869.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.