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Lj0g3v0129799.1

Overview

Field	Value
Gene ID	Lj0g3v0129799
Transcript ID	Lj0g3v0129799.1
Lotus japonicus genome version	MG20 v3.0
Description	Nucleoporin NUP188-like protein [Medicago truncatula] gi\|357473981\|ref\|XP_003607275.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	322	322	–	–
PANTHER	PTHR31431 View details on PTHR31431 Search for proteins/transripts with this domain View external data on PTHR31431	1	363	363	2.30E-83	–
PANTHER	PTHR31431:SF1 View details on PTHR31431:SF1 Search for proteins/transripts with this domain View external data on PTHR31431:SF1	1	363	363	2.30E-83	–
Pfam	PF10487 View details on PF10487 Search for proteins/transripts with this domain View external data on PF10487	36	351	316	2.30E-19	IPR018864 Show description in modal box View details on IPR018864 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	323	340	18	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	341	363	23	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0017056 View details of GO:0017056 AmiGO InterPro QuickGO	Molecular function	Structural constituent of nuclear pore	The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.	Subterm of View details of GO:0005198

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0129799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0129799.1, powered by CORGI.

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