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Lj0g3v0132489.1

Overview

Field Value
Gene ID Lj0g3v0132489
Transcript ID Lj0g3v0132489.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: flowering time control protein FPA-like [Cicer arietinum] gi|502134068|ref|XP_004501989.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 46 46 – –
SUPERFAMILY
SSF54928
35 127 93 1.10E-19
IPR012677
Gene3D
G3DSA:3.30.70.330
37 129 93 2.70E-18
IPR012677
PANTHER
PTHR23189
46 121 76 2.30E-110 –
PANTHER
PTHR23189:SF41
46 121 76 2.30E-110 –
ProSiteProfiles
PS50102
49 121 73 15.426
IPR000504
SMART
SM00360
50 117 68 3.50E-11
IPR000504
Pfam
PF00076
51 114 64 2.30E-08
IPR000504
CDD
cd12310
51 120 70 2.83E-16 –
MobiDBLite
mobidb-lite
121 173 53 – –
Gene3D
G3DSA:3.30.70.330
168 254 87 3.80E-14
IPR012677
SUPERFAMILY
SSF54928
171 253 83 3.09E-14
IPR012677
PANTHER
PTHR23189:SF41
176 628 453 2.30E-110 –
PANTHER
PTHR23189
176 628 453 2.30E-110 –
ProSiteProfiles
PS50102
179 252 74 11.725
IPR000504
SMART
SM00360
180 248 69 3.10E-07
IPR000504
Pfam
PF00076
191 244 54 9.40E-08
IPR000504
MobiDBLite
mobidb-lite
252 291 40 – –
MobiDBLite
mobidb-lite
316 335 20 – –
Pfam
PF07744
501 615 115 5.40E-17
IPR012921
Gene3D
G3DSA:2.40.290.10
576 613 38 7.40E-04
IPR016194
MobiDBLite
mobidb-lite
701 737 37 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj0g3v0132489.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0132489.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.