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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0165549 |
| Transcript ID | Lj0g3v0165549.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Alpha-expansin [Medicago truncatula] gi|357511619|ref|XP_003626098.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| PANTHER | 1 | 254 | 254 | 3.20E-192 | – | |
| PANTHER | 1 | 254 | 254 | 3.20E-192 | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 16 | 13 | – | – | |
| Gene3D | 15 | 154 | 140 | 1.50E-51 | ||
| Phobius | 17 | 25 | 9 | – | – | |
| SUPERFAMILY | 20 | 178 | 159 | 8.02E-57 | ||
| Phobius | 26 | 254 | 229 | – | – | |
| PRINTS | 26 | 41 | 16 | 9.60E-45 | ||
| PRINTS | 44 | 62 | 19 | 9.60E-45 | ||
| ProSiteProfiles | 45 | 160 | 116 | 30.094 | ||
| PRINTS | 57 | 71 | 15 | 4.20E-71 | ||
| Pfam | 62 | 148 | 87 | 1.20E-24 | ||
| SMART | 62 | 150 | 89 | 5.30E-55 | ||
| PRINTS | 66 | 84 | 19 | 9.60E-45 | ||
| PRINTS | 86 | 97 | 12 | 4.20E-71 | ||
| PRINTS | 99 | 109 | 11 | 4.20E-71 | ||
| PRINTS | 118 | 135 | 18 | 4.20E-71 | ||
| PRINTS | 135 | 148 | 14 | 4.20E-71 | ||
| PRINTS | 143 | 159 | 17 | 9.60E-45 | ||
| Gene3D | 155 | 254 | 100 | 3.50E-32 | ||
| SUPERFAMILY | 157 | 250 | 94 | 3.01E-32 | ||
| PRINTS | 159 | 171 | 13 | 4.20E-71 | ||
| Pfam | 161 | 239 | 79 | 4.10E-25 | ||
| ProSiteProfiles | 170 | 250 | 81 | 21.081 | ||
| PRINTS | 171 | 192 | 22 | 4.20E-71 | ||
| PRINTS | 198 | 212 | 15 | 9.60E-45 | ||
| PRINTS | 207 | 228 | 22 | 4.20E-71 | ||
| PRINTS | 236 | 250 | 15 | 9.60E-45 | ||
| PRINTS | 236 | 252 | 17 | 4.20E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of Lj0g3v0165549.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0165549.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.