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Lj0g3v0167719.1

Overview

Field Value
Gene ID Lj0g3v0167719
Transcript ID Lj0g3v0167719.1
Lotus japonicus genome version MG20 v3.0
Description ROP6 [Lotus japonicus] gi|324028908|gb|ADY16660.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24072
1 183 183 2.30E-162 –
PANTHER
PTHR24072:SF179
1 183 183 2.30E-162 –
ProSiteProfiles
PS51420
1 177 177 25.095 –
SMART
SM00173
4 180 177 3.40E-22 –
SUPERFAMILY
SSF52540
6 178 173 4.40E-54
IPR027417
Gene3D
G3DSA:3.40.50.300
6 182 177 1.20E-62
IPR027417
CDD
cd04133
6 178 173 1.02E-134 –
SMART
SM00175
7 180 174 6.80E-28 –
TIGRFAM
TIGR00231
7 171 165 2.20E-36
IPR005225
PRINTS
PR00449
7 28 22 9.20E-38 –
Pfam
PF00071
8 178 171 9.00E-52
IPR001806
SMART
SM00174
9 180 172 4.80E-115 –
PRINTS
PR00449
30 46 17 9.20E-38 –
PRINTS
PR00449
47 69 23 9.20E-38 –
PRINTS
PR00449
109 122 14 9.20E-38 –
PRINTS
PR00449
155 177 23 9.20E-38 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0167719.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0167719.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.