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Lj0g3v0168929.1

Overview

Field Value
Gene ID Lj0g3v0168929
Transcript ID Lj0g3v0168929.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Cicer arietinum] gi|502140212|ref|XP_004504111.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326
37 206 170 7.30E-90 –
PANTHER
PTHR24326:SF196
37 206 170 7.30E-90 –
SUPERFAMILY
SSF46689
44 118 75 1.54E-19
IPR009057
ProSiteProfiles
PS50071
56 116 61 17.427
IPR001356
SMART
SM00389
59 120 62 5.20E-18
IPR001356
CDD
cd00086
61 117 57 1.72E-16 –
Pfam
PF00046
61 114 54 4.90E-16
IPR001356
Gene3D
G3DSA:1.10.10.60
63 123 61 6.80E-20
IPR009057
PRINTS
PR00031
87 96 10 9.50E-06
IPR000047
ProSitePatterns
PS00027
91 114 24 –
IPR017970
PRINTS
PR00031
96 112 17 9.50E-06
IPR000047
Coils
Coil
115 163 49 – –
Pfam
PF02183
116 157 42 2.40E-17
IPR003106
MobiDBLite
mobidb-lite
223 242 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0168929.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0168929.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.