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Lj0g3v0171359.1

Overview

Field	Value
Gene ID	Lj0g3v0171359
Transcript ID	Lj0g3v0171359.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: elongator complex protein 4-like [Glycine max] gi\|356504547\|ref\|XP_003521057.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	29	29	–	–
PANTHER	PTHR12896:SF1 View details on PTHR12896:SF1 Search for proteins/transripts with this domain View external data on PTHR12896:SF1	7	190	184	4.10E-53	–
PANTHER	PTHR12896 View details on PTHR12896 Search for proteins/transripts with this domain View external data on PTHR12896	7	190	184	4.10E-53	IPR008728 Show description in modal box View details on IPR008728 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05625 View details on PF05625 Search for proteins/transripts with this domain View external data on PF05625	19	189	171	2.70E-36	IPR008728 Show description in modal box View details on IPR008728 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	34	99	66	4.10E-04	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0002098 View details of GO:0002098 AmiGO InterPro QuickGO	Biological process	TRNA wobble uridine modification	The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.	Subterm of View details of GO:0002097
GO:0033588 View details of GO:0033588 AmiGO InterPro QuickGO	Cellular component	Elongator holoenzyme complex	A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.	Subterm of View details of GO:0032991 View details of GO:0044424

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0171359.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0171359.1, powered by CORGI.

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