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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0185859 |
| Transcript ID | Lj0g3v0185859.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cyclic nucleotide-gated ion channel 4-like isoform X1 [Cicer arietinum] gi|502155450|ref|XP_004510076.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | – | – | |
| PANTHER | 31 | 228 | 198 | 0 | – | |
| PANTHER | 31 | 228 | 198 | 0 | – | |
| SUPERFAMILY | 35 | 228 | 194 | 1.02E-18 | – | |
| Pfam | 41 | 355 | 315 | 1.70E-10 | ||
| Phobius | 44 | 64 | 21 | – | – | |
| TMHMM | 44 | 66 | 23 | – | – | |
| Phobius | 65 | 75 | 11 | – | – | |
| Phobius | 76 | 98 | 23 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Gene3D | 81 | 227 | 147 | 6.10E-10 | – | |
| Phobius | 99 | 129 | 31 | – | – | |
| TMHMM | 129 | 151 | 23 | – | – | |
| Phobius | 130 | 149 | 20 | – | – | |
| Phobius | 150 | 160 | 11 | – | – | |
| Phobius | 161 | 178 | 18 | – | – | |
| TMHMM | 161 | 183 | 23 | – | – | |
| Phobius | 179 | 189 | 11 | – | – | |
| Phobius | 190 | 212 | 23 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| Phobius | 213 | 333 | 121 | – | – | |
| PANTHER | 283 | 632 | 350 | 0 | – | |
| PANTHER | 283 | 632 | 350 | 0 | – | |
| SUPERFAMILY | 301 | 359 | 59 | 1.02E-18 | – | |
| Gene3D | 301 | 358 | 58 | 6.10E-10 | – | |
| TMHMM | 308 | 325 | 18 | – | – | |
| TMHMM | 332 | 354 | 23 | – | – | |
| Phobius | 334 | 359 | 26 | – | – | |
| Phobius | 360 | 635 | 276 | – | – | |
| Gene3D | 361 | 429 | 69 | 2.60E-12 | – | |
| SUPERFAMILY | 364 | 552 | 189 | 1.83E-34 | ||
| Gene3D | 434 | 550 | 117 | 3.80E-21 | ||
| CDD | 438 | 518 | 81 | 1.87E-13 | – | |
| ProSiteProfiles | 438 | 517 | 80 | 11.631 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0185859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0185859.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.