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Lj0g3v0186579.1

Overview

Field Value
Gene ID Lj0g3v0186579
Transcript ID Lj0g3v0186579.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF003078
25 215 191 3.40E-46
IPR003682
SUPERFAMILY
SSF53335
36 213 178 2.49E-27
IPR029063
Hamap
MF_00074
37 218 182 24.375
IPR003682
PANTHER
PTHR31760
39 214 176 2.20E-79 –
PANTHER
PTHR31760:SF0
39 214 176 2.20E-79 –
Gene3D
G3DSA:3.40.50.150
39 214 176 2.80E-57
IPR029063
Pfam
PF02527
45 213 169 4.80E-45
IPR003682
TIGRFAM
TIGR00138
50 213 164 9.40E-42
IPR003682

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008649
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0186579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0186579.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.