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Lj0g3v0197319.1

Overview

Field Value
Gene ID Lj0g3v0197319
Transcript ID Lj0g3v0197319.1
Lotus japonicus genome version MG20 v3.0
Description NBS-LRR resistance protein [Medicago truncatula] gi|357490923|ref|XP_003615749.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23155:SF505
3 757 755 1.70E-271 –
PANTHER
PTHR23155
3 757 755 1.70E-271 –
CDD
cd14798
11 119 109 2.89E-11 –
Coils
Coil
31 51 21 – –
SUPERFAMILY
SSF52540
138 417 280 4.01E-65
IPR027417
Pfam
PF00931
155 444 290 4.20E-65
IPR002182
Gene3D
G3DSA:3.40.50.300
157 335 179 1.90E-13
IPR027417
PRINTS
PR00364
178 193 16 6.30E-18 –
PRINTS
PR00364
251 265 15 6.30E-18 –
PRINTS
PR00364
355 369 15 6.30E-18 –
SUPERFAMILY
SSF52058
481 673 193 3.85E-29
IPR032675
Gene3D
G3DSA:3.80.10.10
556 658 103 1.00E-08
IPR032675
SUPERFAMILY
SSF52058
705 889 185 3.85E-29
IPR032675
Gene3D
G3DSA:3.80.10.10
729 995 267 1.70E-19
IPR032675
PANTHER
PTHR23155
812 837 26 1.70E-271 –
PANTHER
PTHR23155:SF505
812 837 26 1.70E-271 –
SUPERFAMILY
SSF52058
863 991 129 2.49E-11
IPR032675
PANTHER
PTHR23155
955 978 24 1.70E-271 –
PANTHER
PTHR23155:SF505
955 978 24 1.70E-271 –
PRINTS
PR00364
977 993 17 6.30E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 39

Expression data

Expression pattern

Expression pattern of Lj0g3v0197319.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0197319.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.