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Lj0g3v0201259.1

Overview

Field Value
Gene ID Lj0g3v0201259
Transcript ID Lj0g3v0201259.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor HBP-1b(c1)-like [Cicer arietinum] gi|502122910|ref|XP_004497935.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22952:SF151
30 74 45 4.40E-185 –
PANTHER
PTHR22952
30 74 45 4.40E-185 –
MobiDBLite
mobidb-lite
38 61 24 – –
MobiDBLite
mobidb-lite
73 95 23 – –
PANTHER
PTHR22952:SF151
105 181 77 4.40E-185 –
PANTHER
PTHR22952
105 181 77 4.40E-185 –
MobiDBLite
mobidb-lite
115 221 107 – –
PANTHER
PTHR22952
211 267 57 4.40E-185 –
Gene3D
G3DSA:1.20.5.170
211 260 50 5.90E-09 –
PANTHER
PTHR22952:SF151
211 267 57 4.40E-185 –
SMART
SM00338
214 287 74 1.80E-08
IPR004827
ProSiteProfiles
PS50217
216 260 45 9.243
IPR004827
SUPERFAMILY
SSF57959
218 260 43 4.82E-07 –
CDD
cd14708
218 262 45 9.63E-21 –
Pfam
PF00170
218 256 39 2.60E-08
IPR004827
ProSitePatterns
PS00036
221 236 16 –
IPR004827
Coils
Coil
237 264 28 – –
PANTHER
PTHR22952:SF151
291 459 169 4.40E-185 –
PANTHER
PTHR22952
291 459 169 4.40E-185 –
Pfam
PF14144
310 383 74 4.00E-29
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj0g3v0201259.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0201259.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.