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Lj0g3v0209709.2

Overview

Field Value
Gene ID Lj0g3v0209709
Transcript ID Lj0g3v0209709.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11932:SF84
5 571 567 0 –
PANTHER
PTHR11932
5 571 567 0 –
SUPERFAMILY
SSF74788
11 385 375 1.39E-108
IPR016159
Gene3D
G3DSA:1.20.1310.10
11 146 136 2.40E-35 –
Pfam
PF00888
25 570 546 7.40E-155
IPR001373
Gene3D
G3DSA:1.20.1310.10
147 264 118 3.70E-39 –
Gene3D
G3DSA:1.20.1310.10
268 392 125 4.80E-32 –
Coils
Coil
322 342 21 – –
SUPERFAMILY
SSF75632
388 569 182 1.03E-62
IPR016158
ProSiteProfiles
PS50069
389 571 183 40.992
IPR016158
Gene3D
G3DSA:1.20.1310.10
393 501 109 2.40E-38 –
SMART
SM00182
420 569 150 8.20E-76
IPR016158
Gene3D
G3DSA:4.10.1030.10
507 570 64 4.90E-26 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0209709.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0209709.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.