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IPR001373

Description

IPR001373 is a Cullin, N-terminal.

<p>Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express several cullins (Cul1, 2, 3, 4A, 4B, 5, 7 and 9), each forming part of a multi-subunit ubiquitin complex [[cite:PUB00103546], [cite:PUB00075111]]. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [[cite:PUB00000937]], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [[cite:PUB00042618], [cite:PUB00010627], [cite:PUB00031678]].</p> <p>This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an α+β domain, and a winged helix-like domain.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.

Associated Lotus transcripts 49

Transcript Name Description Predicted domains Domain count
PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| 8
PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| 13
Cullin-like protein1 [Medicago truncatula] gi|357478781|ref|XP_003609676.1| 7
PREDICTED: cullin-1-like isoform 1 [Solanum lycopersicum] gi|460366713|ref|XP_004229224.1| 7
PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] gi|356537932|ref|XP_003537460.1| 17
PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| 16
PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| 20
PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] gi|356537932|ref|XP_003537460.1| 17
PREDICTED: anaphase-promoting complex subunit 2-like, partial [Cicer arietinum] gi|502183944|ref|XP_004517251.1| 14
Anaphase-promoting complex subunit [Medicago truncatula] gi|357474931|ref|XP_003607751.1| 10
PREDICTED: cullin-1-like [Cicer arietinum] gi|502112494|ref|XP_004494349.1| 16
PREDICTED: cullin-3A-like [Glycine max] gi|356572514|ref|XP_003554413.1| 18
PREDICTED: cullin-3A-like [Cicer arietinum] gi|502093740|ref|XP_004490037.1| 15
Cullin-like protein1 [Medicago truncatula] gi|357478711|ref|XP_003609641.1| 7
PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| 16
PREDICTED: cullin-1-like [Glycine max] gi|356556122|ref|XP_003546376.1| 16
PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| 18
PREDICTED: cullin-4-like [Glycine max] gi|356555528|ref|XP_003546083.1| 21
Cullin 1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1NB34|I1NB34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0767400 21
Cullin family protein; TAIR: AT1G69670.1 cullin 3B; Swiss-Prot: sp|Q9C9L0|CUL3B_ARATH Cullin-3B; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 20
Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 20
Cullin family protein; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|I1KXS9|I1KXS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 20
Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A1J7HV59|A0A1J7HV59_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 20
Anaphase promoting complex subunit 2; TAIR: AT2G04660.1 anaphase-promoting complex/cyclosome 2; Swiss-Prot: sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2; TrEMBL-Plants: tr|G7JG99|G7JG99_MEDTR Anaphase promoting complex subunit 2; Found in the gene: LotjaGi4g1v0090400 21
Anaphase promoting complex subunit 2; TAIR: AT2G04660.1 anaphase-promoting complex/cyclosome 2; Swiss-Prot: sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2; TrEMBL-Plants: tr|G7JG99|G7JG99_MEDTR Anaphase promoting complex subunit 2; Found in the gene: LotjaGi4g1v0090400 21
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 27
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 19
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344000 17
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 17
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 17
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 19
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 19
Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 19
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 20
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 20
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 20
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 20
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 21
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A0B2STE7|A0A0B2STE7_GLYSO Cullin-1; Found in the gene: LotjaGi6g1v0248100 18
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A0R0G189|A0A0R0G189_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 21
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 21
Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1L117|I1L117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0248100 21
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A0S3S3A0|A0A0S3S3A0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0310200 25
Cullin; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 23
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|V7BPK5|V7BPK5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0310200 16
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|V7BPK5|V7BPK5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0310200 25
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 23
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 23
Cullin, putative; TAIR: AT5G46210.1 cullin4; Swiss-Prot: sp|Q8LGH4|CUL4_ARATH Cullin-4; TrEMBL-Plants: tr|A0A151RWC9|A0A151RWC9_CAJCA Cullin-4B; Found in the gene: LotjaGi6g1v0310200 23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF75632 SUPERFAMILY 1 2.04