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Lj0g3v0216379.1

Overview

Field Value
Gene ID Lj0g3v0216379
Transcript ID Lj0g3v0216379.1
Lotus japonicus genome version MG20 v3.0
Description Histone acetyltransferase [Medicago truncatula] gi|357466361|ref|XP_003603465.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51727
1 325 325 90.913
IPR031162
SMART
SM01250
1 226 226 1.20E-48
IPR013178
Pfam
PF08214
1 147 147 6.20E-19
IPR013178
PANTHER
PTHR13808
1 363 363 1.30E-222 –
PANTHER
PTHR13808:SF6
1 363 363 1.30E-222 –
SUPERFAMILY
SSF57850
194 256 63 2.47E-10 –
MobiDBLite
mobidb-lite
383 440 58 – –
PANTHER
PTHR13808:SF6
386 414 29 1.30E-222 –
PANTHER
PTHR13808
386 414 29 1.30E-222 –
ProSiteProfiles
PS50134
432 522 91 11.776
IPR000197
SMART
SM00551
438 520 83 2.10E-11
IPR000197
PANTHER
PTHR13808:SF6
439 527 89 1.30E-222 –
PANTHER
PTHR13808
439 527 89 1.30E-222 –
SUPERFAMILY
SSF57933
442 524 83 1.05E-16
IPR000197
Gene3D
G3DSA:1.20.1020.10
442 527 86 1.60E-16
IPR000197
Pfam
PF02135
445 518 74 1.00E-10
IPR000197

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003712
Molecular function Transcription coregulator activity A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
Subterm of
GO:0004402
Molecular function Histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016573
Biological process Histone acetylation The modification of a histone by the addition of an acetyl group.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0216379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0216379.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.