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Lj0g3v0226179.1

Overview

Field Value
Gene ID Lj0g3v0226179
Transcript ID Lj0g3v0226179.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic-like [Glycine max] gi|356551540|ref|XP_003544132.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 19 19 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 1 1 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 19 19 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
2 12 11 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
13 19 7 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
20 325 306 – –
Gene3D
G3DSA:3.40.50.1360
85 323 239 9.90E-74 –
SUPERFAMILY
SSF100950
85 323 239 9.57E-66 –
TIGRFAM
TIGR01198
85 322 238 1.80E-61
IPR005900
Pfam
PF01182
86 313 228 1.90E-66
IPR006148
PANTHER
PTHR11054:SF3
87 323 237 2.60E-117 –
PANTHER
PTHR11054
87 323 237 2.60E-117 –
CDD
cd01400
87 315 229 3.66E-88
IPR005900

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006098
Biological process Pentose-phosphate shunt The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
Subterm of
GO:0017057
Molecular function 6-phosphogluconolactonase activity Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0226179.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0226179.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.