Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0227659.1

Overview

Field Value
Gene ID Lj0g3v0227659
Transcript ID Lj0g3v0227659.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51375
1 35 35 9.756
IPR002885
PANTHER
PTHR24015:SF280
2 108 107 8.40E-54 –
PANTHER
PTHR24015
2 108 107 8.40E-54 –
Pfam
PF01535
8 33 26 0.087
IPR002885
TIGRFAM
TIGR00756
12 36 25 2.00E-04
IPR002885
Pfam
PF13041
43 91 49 2.50E-09
IPR002885
ProSiteProfiles
PS51375
44 78 35 11.082
IPR002885
TIGRFAM
TIGR00756
46 80 35 1.80E-05
IPR002885
ProSiteProfiles
PS51375
79 109 31 8.035
IPR002885
PANTHER
PTHR24015
133 221 89 8.40E-54 –
PANTHER
PTHR24015:SF280
133 221 89 8.40E-54 –
Pfam
PF12854
136 164 29 2.00E-06
IPR002885
ProSiteProfiles
PS51375
138 172 35 9.131
IPR002885
TIGRFAM
TIGR00756
142 165 24 1.40E-04
IPR002885
ProSiteProfiles
PS51375
173 207 35 6.051
IPR002885
PANTHER
PTHR24015:SF280
237 285 49 8.40E-54 –
PANTHER
PTHR24015
237 285 49 8.40E-54 –
ProSiteProfiles
PS51375
260 285 26 6.577
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0227659.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0227659.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.