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Lj0g3v0235899.1

Overview

Field Value
Gene ID Lj0g3v0235899
Transcript ID Lj0g3v0235899.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cicer arietinum] gi|502153082|ref|XP_004509209.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51375
1 33 33 6.818
IPR002885
PANTHER
PTHR24015:SF511
17 269 253 2.10E-136 –
PANTHER
PTHR24015
17 269 253 2.10E-136 –
ProSiteProfiles
PS51375
34 64 31 5.031
IPR002885
ProSiteProfiles
PS51375
65 99 35 9.186
IPR002885
Pfam
PF01535
68 97 30 0.49
IPR002885
Gene3D
G3DSA:1.25.40.10
81 89 9 2.20E-04
IPR011990
ProSiteProfiles
PS51375
136 166 31 10.413
IPR002885
Gene3D
G3DSA:1.25.40.10
139 250 112 2.20E-04
IPR011990
TIGRFAM
TIGR00756
139 168 30 2.20E-07
IPR002885
Pfam
PF13041
167 215 49 1.40E-12
IPR002885
ProSiteProfiles
PS51375
167 201 35 11.926
IPR002885
TIGRFAM
TIGR00756
169 203 35 2.70E-09
IPR002885
ProSiteProfiles
PS51375
202 236 35 10.633
IPR002885
TIGRFAM
TIGR00756
205 230 26 4.00E-05
IPR002885
TIGRFAM
TIGR00756
235 269 35 1.10E-05
IPR002885
Pfam
PF01535
235 264 30 1.50E-05
IPR002885
ProSiteProfiles
PS51375
237 267 31 6.785
IPR002885
PANTHER
PTHR24015
307 319 13 2.10E-136 –
PANTHER
PTHR24015:SF511
307 319 13 2.10E-136 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0235899.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0235899.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.